Genetic and antigenic characterization of influenza A(H3N2) in Cameroon during the 2014-2016 influenza seasons
Identifieur interne : 000051 ( France/Analysis ); précédent : 000050; suivant : 000052Genetic and antigenic characterization of influenza A(H3N2) in Cameroon during the 2014-2016 influenza seasons
Auteurs : Gwladys C. Monamele [Cameroun] ; Marie-Astrid Vernet [Cameroun] ; Mohammed R. Njankouo [Cameroun] ; Kathleen Victoir [France] ; Jane Francis Akoachere [Cameroun] ; Damian Anong [Cameroun] ; Richard Njouom [Cameroun]Source :
- PLoS ONE [ 1932-6203 ] ; 2017.
Descripteurs français
- Wicri :
- geographic : Cameroun.
English descriptors
- mix :
Abstract
The first outbreak of influenza A(H3N2) occurred in 1968 and caused the third flu pandemic of the 20th century. It has affected multiple countries over time. The best strategy to reduce the burden of influenza is through vaccination whose efficacy varies with respect to the circulating strains. This study was performed to better understand the molecular evolution of influenza A(H3N2) and assess vaccine efficacy in Cameroon. Complete sequences of three gene segments were obtained from 2014 to 2016 influenza seasons in Cameroon. Hemagglutinin (HA), Neuraminidase (NA) and matrix (M) genes of 35 A(H3N2) virus strains were amplified and sequenced. Predicted vaccine efficacy was measured using the Pepitope model. Phylogenetic analysis of the HA gene showed that all Cameroonian strains had evolved away from the 3C.1-A/Texas/50/2012-like clade. Globally, 2014 virus strains clustered with the 2015–2016 vaccine strain, 3C.3a-A/Switzerland/9715293/2013, whereas 2015 and 2016 virus strains clustered with the 2016–2017 vaccine strain, 3C.2a-A/HongKong/4801/2014. In order to determine the genotypic drug susceptibility to neuraminidase inhibitors and amantadine, the NA and M2 protein coding sequences were analyzed. There was no strain with characteristic mutation for resistance to neuraminidase inhibitors, per contra; all strains possessed the substitution S31N, peculiar of resistance to adamantanes. There was drift in influenza A(H3N2) dominant epitopes B (2014 and 2015) to epitopes A (2016) with a theoretical efficiency in vaccine ranging from low to moderate. The presence of several antigenic site mutations among H3N2 virus strains between 2014–2016 influenza seasons in Cameroon confirms the progressing evolution of circulating H3N2 strains.
Url:
- http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5587321
- https://hal-pasteur.archives-ouvertes.fr/pasteur-01659289
DOI: 10.1371/journal.pone.0184411
PubMed: 28877235
PubMed Central: 5587321
Affiliations:
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PMC:5587321Le document en format XML
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It has affected multiple countries over time. The best strategy to reduce the burden of influenza is through vaccination whose efficacy varies with respect to the circulating strains. This study was performed to better understand the molecular evolution of influenza A(H3N2) and assess vaccine efficacy in Cameroon. Complete sequences of three gene segments were obtained from 2014 to 2016 influenza seasons in Cameroon. Hemagglutinin (HA), Neuraminidase (NA) and matrix (M) genes of 35 A(H3N2) virus strains were amplified and sequenced. Predicted vaccine efficacy was measured using the P<sub>epitope</sub> model. Phylogenetic analysis of the HA gene showed that all Cameroonian strains had evolved away from the 3C.1-A/Texas/50/2012-like clade. Globally, 2014 virus strains clustered with the 2015–2016 vaccine strain, 3C.3a-A/Switzerland/9715293/2013, whereas 2015 and 2016 virus strains clustered with the 2016–2017 vaccine strain, 3C.2a-A/HongKong/4801/2014. In order to determine the genotypic drug susceptibility to neuraminidase inhibitors and amantadine, the NA and M2 protein coding sequences were analyzed. There was no strain with characteristic mutation for resistance to neuraminidase inhibitors, per contra; all strains possessed the substitution S31N, peculiar of resistance to adamantanes. There was drift in influenza A(H3N2) dominant epitopes B (2014 and 2015) to epitopes A (2016) with a theoretical efficiency in vaccine ranging from low to moderate. The presence of several antigenic site mutations among H3N2 virus strains between 2014–2016 influenza seasons in Cameroon confirms the progressing evolution of circulating H3N2 strains.</p></div></front><back><div1 type="bibliography"><listBibl><biblStruct></biblStruct><biblStruct><analytic><author><name sortKey="Kilbourne, Ed" uniqKey="Kilbourne E">ED Kilbourne</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Dawood, Fs" uniqKey="Dawood F">FS Dawood</name></author><author><name sortKey="Iuliano, Ad" uniqKey="Iuliano A">AD Iuliano</name></author><author><name sortKey="Reed, C" uniqKey="Reed C">C Reed</name></author><author><name sortKey="Meltzer, Mi" uniqKey="Meltzer M">MI Meltzer</name></author><author><name sortKey="Shay, Dk" uniqKey="Shay D">DK Shay</name></author><author><name sortKey="Cheng, P Y" uniqKey="Cheng P">P-Y Cheng</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Mcanerney, Jm" uniqKey="Mcanerney J">JM 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Parkhouse</name></author><author><name sortKey="Ross, Ted M" uniqKey="Ross T">Ted M Ross</name></author><author><name sortKey="Alby, K" uniqKey="Alby K">K Alby</name></author><author><name sortKey="Hensley, Scott E" uniqKey="Hensley S">Scott E Hensley</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Hodgson, D" uniqKey="Hodgson D">D Hodgson</name></author><author><name sortKey="Baguelin, M" uniqKey="Baguelin M">M Baguelin</name></author><author><name sortKey="Van Leeuwen, E" uniqKey="Van Leeuwen E">E van Leeuwen</name></author><author><name sortKey="Panovska Griffiths, J" uniqKey="Panovska Griffiths J">J Panovska-Griffiths</name></author><author><name sortKey="Ramsay, M" uniqKey="Ramsay M">M Ramsay</name></author><author><name sortKey="Pebody, R" uniqKey="Pebody R">R Pebody</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Melidou, A" uniqKey="Melidou A">A Melidou</name></author><author><name sortKey="Kyriazopoulou, V" uniqKey="Kyriazopoulou V">V Kyriazopoulou</name></author><author><name sortKey="Diza, E" uniqKey="Diza E">E Diza</name></author><author><name sortKey="Alexiou, S" uniqKey="Alexiou S">S Alexiou</name></author><author><name sortKey="Pierroutsakos, Y" uniqKey="Pierroutsakos Y">Y Pierroutsakos</name></author></analytic></biblStruct></listBibl></div1></back></TEI><affiliations><list><country><li>Cameroun</li><li>France</li></country><region><li>Île-de-France</li></region><settlement><li>Paris</li></settlement></list><tree><country name="Cameroun"><noRegion><name sortKey="Monamele, Gwladys C" sort="Monamele, Gwladys C" uniqKey="Monamele G" first="Gwladys C." last="Monamele">Gwladys C. Monamele</name></noRegion><name sortKey="Akoachere, Jane Francis" sort="Akoachere, Jane Francis" uniqKey="Akoachere J" first="Jane Francis" last="Akoachere">Jane Francis Akoachere</name><name sortKey="Anong, Damian" sort="Anong, Damian" uniqKey="Anong D" first="Damian" last="Anong">Damian Anong</name><name sortKey="Monamele, Gwladys C" sort="Monamele, Gwladys C" uniqKey="Monamele G" first="Gwladys C." last="Monamele">Gwladys C. Monamele</name><name sortKey="Njankouo, Mohammed R" sort="Njankouo, Mohammed R" uniqKey="Njankouo M" first="Mohammed R." last="Njankouo">Mohammed R. Njankouo</name><name sortKey="Njouom, Richard" sort="Njouom, Richard" uniqKey="Njouom R" first="Richard" last="Njouom">Richard Njouom</name><name sortKey="Vernet, Marie Astrid" sort="Vernet, Marie Astrid" uniqKey="Vernet M" first="Marie-Astrid" last="Vernet">Marie-Astrid Vernet</name></country><country name="France"><region name="Île-de-France"><name sortKey="Victoir, Kathleen" sort="Victoir, Kathleen" uniqKey="Victoir K" first="Kathleen" last="Victoir">Kathleen Victoir</name></region></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
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